Thank you voting committee for the privilege of having the first Bio-computing, Bio-Informatics, Biology on Groups Drupal
Our mandate
*how Drupal can be used to scientists run their laboratories, to build software for their unique applications dealing with Biological, Genetics and Computational properties
*help people connect with scientists for better support for the large amounts of genetic data.
What if all the tools that I am listing below had the chance to rebuild their web architecture incorporating what we've learned to love about Drupal - Templating, Nodes, CCK, Views, and the 100+ modules that make this such an excellent platform, would they? could they? In our group, we hope to discuss some of the visual challenges along with architecture that would support BioInformatics activities performed over sometimes 10^15 bytes of data.
BioInformatics Tools
*aMAZE View aMAZE
*Biological Abstraction Layer for Simulation Analysis (BALSA) View Biological Abstraction Layer for Simulation Analysis (BALSA)
*Biology Workbench View Biology Workbench
*Biomolecular Object Network Database (BOND) View Biomolecular Object Network Database (BOND)
*BioPAX : Biological Pathways Exchange View BioPAX : Biological Pathways Exchange
*BRC - Pharmabase View BRC - Pharmabase
*Cancer Genome Anatomy Project (CGAP) View Cancer Genome Anatomy Project (CGAP)
*CellML View CellML
*DAVID: Database for Annotation, Visualization and Integrated Discovery View DAVID: Database for Annotation, Visualization and Integrated Discovery
*DisEMBL Protein Disorder Prediction/Predictor View DisEMBL Protein Disorder Prediction/Predictor
*DrugBank View DrugBank
*ELM - Eukaryotic Linear Motif resource View ELM - Eukaryotic Linear Motif resource
*EMBL-EBI: European Bioinformatics Institute View EMBL-EBI: European Bioinformatics Institute
*Entrez View Entrez
*GEDI, the Gene Expression Dynamics Inspector View GEDI, the Gene Expression Dynamics Inspector
*GeneCards View GeneCards
*GenMAPP View GenMAPP
*iHOP (Information Hyperlinked Over Proteins) View iHOP (Information Hyperlinked Over Proteins)
*Jena Library of Biological Macromolecules View Jena Library of Biological Macromolecules
*Kyoto Encyclopedia of Genes and Genomes (KEGG) View Kyoto Encyclopedia of Genes and Genomes (KEGG)
*Melanoma Molecular Map Project (MMMP) View Melanoma Molecular Map Project (MMMP)
*miRBase View miRBase
*NetPhorest View NetPhorest
*NetPhos View NetPhos
*NetworKIN View NetworKIN
*Oncomine Research Platform View Oncomine Research Platform
*PANTHER View PANTHER
*PharmGKB: Pharmacogenetics and Pharmacogenomics Knowledge Base View PharmGKB: Pharmacogenetics and Pharmacogenomics Knowledge Base
*PIR - Protein Information Resource View PIR - Protein Information Resource
*PlantsP View PlantsP
*Protein Disorder/Globularity/Domain Prediction View Protein Disorder/Globularity/Domain Prediction
*Protein Kinase Substrate Prediction View Protein Kinase Substrate Prediction
*PubChem View PubChem
*Reactome a curated knowledgebase of biological pathways
*Robetta Server View Robetta Server
Search Tool for Interactions of Chemicals (STITCH) View Search Tool for Interactions of Chemicals (STITCH)
*Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) View Search Tool for the Retrieval of Interacting Genes/Proteins (STRING)
*SenseLab View SenseLab
*SigPath View SigPath
*SRS 6 at EBI View SRS 6 at EBI
*Systems Biology Markup Language (SBML) View Systems Biology Markup Language (SBML)
*The Cancer Genome Atlas View The Cancer Genome Atlas
*The Signaling Gateway View The Signaling Gateway
*TRANSFAC View TRANSFAC
*TRANSPATH Signal Transduction Browser View TRANSPATH Signal Transduction Browser
*TRRD (Transcription Regulatory Region Database) View TRRD (Transcription Regulatory Region Database)
*UCSC Genome Bioinformatics View UCSC Genome Bioinformatics